GitHub - voxelmorph/voxelmorph
source link: https://github.com/voxelmorph/voxelmorph
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README.md
voxelmorph
Notes
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Code was initially written in python 2.7, and now transfered to 3.5.
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We are currently cleaning up our code for general use. There are several hard-coded elements related to data preprocessing and format. You will likely need to rewrite some of the data loading code in 'datagenerator.py' for your own datasets.
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We provide the atlas used in our papers at data/atlas_norm.npz.
Papers
Unsupervised Learning for Fast Probabilistic Diffeomorphic Registration
Adrian V. Dalca, Guha Balakrishnan, John Guttag, Mert R. Sabuncu
MICCAI 2018. eprint arXiv:1805.04605
An Unsupervised Learning Model for Deformable Medical Image Registration
Guha Balakrishnan, Amy Zhao, Mert R. Sabuncu, John Guttag, Adrian V. Dalca
CVPR 2018. eprint arXiv:1802.02604
Instructions
Training:
- Change base_data_dir in train.py to the location of your image files.
- Run train.py [model_name] [gpu-id]
Testing (Dice scores):
Put test filenames in data/test_examples.txt, and anatomical labels in data/test_labels.mat.
- Run test.py [model_name] [gpu-id] [iter-num]
Contact:
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